C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5620
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077991 Gm5620-001 ENSMUSG00000056904 10090 + 9:91097149-91098496 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000077991
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000077991 0.778±0.43 0.086±0.06 0.109±0.03 0.207±0.05 0.386±0.17 0.200±0.09 1.232±0.47 0.104±0.05 0.129±0.07 0.222±0.05 0.427±0.34 0.084±0.04 0.898±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JF CIL_0007JF_0002 UCNEbase 9:90313955-92046042
CIL_0008F2 CIL_0008F2_0002 VISTA 9:90533186-91135005
CIL_000841 CIL_000841_0002 VISTA 9:90602260-91205637
CIL_0009BL CIL_0009BL_0002 VISTA 9:90773325-91374668
CIL_0009D8 CIL_0009D8_0002 VISTA 9:90787948-91390091
CIL_0008O7 CIL_0008O7_0002 VISTA 9:91066858-91668202

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 1472
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 1406
ENSDART00000066177 tuba2-001 protein_coding Danio_rerio 0 1212
ENST00000248437 TUBA4A-001 protein_coding Homo_sapiens 0 1423
ENST00000295766 TUBA1A-002 protein_coding Homo_sapiens 0 1910
ENST00000301071 TUBA1A-001 protein_coding Homo_sapiens 0 1910
ENST00000301072 TUBA1C-001 protein_coding Homo_sapiens 0 1882
ENST00000312988 TUBA3E-001 protein_coding Homo_sapiens 0 1327
ENST00000321253 TUBA3D-001 protein_coding Homo_sapiens 0 1343
ENST00000332858 TUBA1B-002 retained_intron Homo_sapiens 0 1997
ENST00000336023 TUBA1B-001 protein_coding Homo_sapiens 0 1999
ENST00000392088 TUBA4A-002 protein_coding Homo_sapiens 0 1421
ENST00000398989 TUBA4A-011 protein_coding Homo_sapiens 0 617
ENST00000425085 TUBAP-001 processed_pseudogene Homo_sapiens 0 1085
ENST00000437364 RP11-346M5.1-001 processed_pseudogene Homo_sapiens 0 1050
ENST00000437634 AC012501.3-001 transcribed_processed_pseudogene Homo_sapiens 0 909
ENST00000445574 RP11-184J23.2-001 processed_pseudogene Homo_sapiens 0 1062
ENST00000472881 RP11-959F10.5-001 processed_pseudogene Homo_sapiens 0 872
ENST00000486997 TUBA4B-004 transcribed_unprocessed_pseudogene Homo_sapiens 0 1208
ENST00000498660 TUBA4A-006 processed_transcript Homo_sapiens 0 817
ENST00000501221 RP11-447H19.1-001 processed_pseudogene Homo_sapiens 0 1411
ENST00000505780 CTD-2158P22.4-001 processed_pseudogene Homo_sapiens 0 460
ENST00000506481 RP11-93I21.2-001 processed_pseudogene Homo_sapiens 0 573
ENST00000530835 TUBAP2-001 processed_pseudogene Homo_sapiens 0 1845
ENST00000541364 TUBA1C-002 protein_coding Homo_sapiens 0 1881
ENST00000546918 TUBA1A-011 protein_coding Homo_sapiens 0 701
ENST00000547476 TUBA1B-007 protein_coding Homo_sapiens 0 494
ENST00000547765 TUBA1B-006 nonsense_mediated_decay Homo_sapiens 0 1997
ENST00000547939 TUBA1A-009 protein_coding Homo_sapiens 0 1055
ENST00000548363 TUBA1A-015 retained_intron Homo_sapiens 0 551
ENST00000548470 TUBA1C-007 retained_intron Homo_sapiens 0 1528
ENST00000549183 TUBA1C-006 protein_coding Homo_sapiens 0 551
ENST00000549818 TUBA1C-008 nonsense_mediated_decay Homo_sapiens 2e-23 113
ENST00000549870 TUBA1B-011 protein_coding Homo_sapiens 0 527
ENST00000550254 TUBA1A-014 retained_intron Homo_sapiens 0 333
ENST00000550367 TUBA1B-010 protein_coding Homo_sapiens 0 617
ENST00000550767 TUBA1A-006 protein_coding Homo_sapiens 0 1908
ENST00000550811 TUBA1A-010 protein_coding Homo_sapiens 0 267
ENST00000551324 TUBA1B-008 retained_intron Homo_sapiens 0 327
ENST00000552125 TUBA1C-009 nonsense_mediated_decay Homo_sapiens 0 503
ENST00000552448 TUBA1C-003 nonsense_mediated_decay Homo_sapiens 0 1881
ENST00000552924 TUBA1A-008 protein_coding Homo_sapiens 0 640
ENST00000552984 TUBA1B-009 protein_coding Homo_sapiens 0 372
ENST00000559595 RP11-522B15.6-001 processed_pseudogene Homo_sapiens 0 521
ENST00000569261 TUBA8P2-001 transcribed_processed_pseudogene Homo_sapiens 0 348
ENST00000611325 RP11-386G11.11-001 processed_pseudogene Homo_sapiens 0 239

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