C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099636 Actg-ps1-201 ENSMUSG00000074978 10090 + 8:46229566-46229973 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099636
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099636 0.416±0.28 0.305±0.08 0.397±0.03 4.793±6.56 2.133±2.43 0.363±0.13 0.198±0.08 0.128±0.01 0.153±0.11 0.354±0.27 0.178±0.00 0.559±0.43 0.415±0.23 0.276±0.18

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 442
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 442
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 442
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 442
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 442
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 377
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 339
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 300
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 486
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 459
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 398
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 398
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 398
ENST00000415776 ACTG1P2-001 processed_pseudogene Homo_sapiens 0 366
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 357
ENST00000417985 ACTBP1-001 processed_pseudogene Homo_sapiens 0 368
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 346
ENST00000418987 RP11-394D2.1-001 processed_pseudogene Homo_sapiens 0 331
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 340
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 372
ENST00000423391 ACTBL2-001 protein_coding Homo_sapiens 0 342
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 300
ENST00000425411 ACTG1P11-001 processed_pseudogene Homo_sapiens 0 366
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 486
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 285
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 335
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 294
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 398
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 2e-30 137
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 486
ENST00000473257 ACTB-011 processed_transcript Homo_sapiens 0 279
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 340
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 237
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 291
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 377
ENST00000558391 RP11-752G15.9-001 transcribed_processed_pseudogene Homo_sapiens 0 279
ENST00000560958 RP11-752G15.9-002 processed_transcript Homo_sapiens 0 279
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 459
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 459
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 459
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 459
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 459
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 459
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 254
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 459
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 243
ENST00000587663 ACTBP9-001 processed_pseudogene Homo_sapiens 0 327
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 459

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