C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392524 HNRNPA3-001 ENSG00000170144 9606 + 2:177212563-177220085 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392524
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392524 22.445±0.00 24.017±0.00 10.531±0.00 20.854±0.00 5.891±0.00 22.156±0.00 6.501±0.00 16.863±0.00 8.753±0.00 36.193±8.73 44.346±13.57 49.961±18.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_00017S CIL_00017S_0001 CGP 2:176269395-177223958
CIL_00017P CIL_00017P_0001 CGP 2:177212563-177392697

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0030529 TAS ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111962 Hnrnpa3-001 protein_coding Mus_musculus 0 2798
ENSMUST00000111964 Hnrnpa3-002 protein_coding Mus_musculus 0 2691
ENSMUST00000091130 Gm5641-201 protein_coding Mus_musculus 0 2337
ENSMUST00000071732 Gm6793-201 protein_coding Mus_musculus 0 2202
ENSMUST00000090792 Hnrnpa3-201 protein_coding Mus_musculus 0 1770
ENSMUST00000117582 Gm5940-001 processed_pseudogene Mus_musculus 0 1657
ENSMUST00000164947 Hnrnpa3-202 protein_coding Mus_musculus 0 1655
ENSMUST00000121942 Gm6161-001 processed_pseudogene Mus_musculus 0 1650
ENSMUST00000177820 Gm9242-201 protein_coding Mus_musculus 0 1650
ENSMUST00000125165 Gm11847-001 processed_pseudogene Mus_musculus 0 1646
ENSMUST00000161973 Gm6397-001 processed_pseudogene Mus_musculus 0 1629
ENSMUST00000120017 Gm12960-001 processed_pseudogene Mus_musculus 0 1628
ENSMUST00000168178 Gm6254-001 processed_pseudogene Mus_musculus 0 1626
ENSMUST00000119652 Gm11991-001 processed_pseudogene Mus_musculus 0 1600
ENSMUST00000117287 Gm14398-001 processed_pseudogene Mus_musculus 0 1581
ENSMUST00000119775 Gm6506-001 processed_pseudogene Mus_musculus 0 1500
ENSMUST00000111961 Hnrnpa3-003 protein_coding Mus_musculus 0 1489
ENSMUST00000119643 Gm6758-001 processed_pseudogene Mus_musculus 0 1476
ENSMUST00000172004 Gm6153-001 processed_pseudogene Mus_musculus 0 1471
ENSMUST00000122378 Gm14730-001 processed_pseudogene Mus_musculus 0 1463
ENSMUST00000119765 Gm9431-001 processed_pseudogene Mus_musculus 0 1410
ENSMUST00000120104 Gm12129-001 processed_pseudogene Mus_musculus 0 1397
ENSMUST00000032395 Gm7399-001 processed_pseudogene Mus_musculus 0 1308
ENSMUST00000185178 Gm17190-002 protein_coding Mus_musculus 0 1262
ENSMUST00000166043 Gm17082-001 processed_pseudogene Mus_musculus 0 1238
ENSMUST00000191574 RP24-177N20.1-001 processed_pseudogene Mus_musculus 0 1234
ENSMUST00000089593 Gm7551-201 processed_pseudogene Mus_musculus 0 1227
ENSMUST00000120507 Gm12961-001 processed_pseudogene Mus_musculus 0 1120
ENSMUST00000073014 Gm8991-201 protein_coding Mus_musculus 0 1011
ENSMUST00000184369 Gm17190-001 translated_processed_pseudogene Mus_musculus 0 989
ENSMUST00000141974 Hnrnpa3-004 protein_coding Mus_musculus 0 907
ENSMUST00000121434 Gm14052-001 processed_pseudogene Mus_musculus 0 891
ENSMUST00000117756 Gm12194-001 processed_pseudogene Mus_musculus 0 883
ENSMUST00000189662 RP23-472J11.2-001 processed_pseudogene Mus_musculus 0 880
ENSMUST00000119037 Gm12986-001 processed_pseudogene Mus_musculus 0 848
ENSMUST00000119442 Gm13369-001 processed_pseudogene Mus_musculus 0 795
ENSMUST00000120487 Gm12229-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000132392 Hnrnpa3-005 retained_intron Mus_musculus 0 599
ENSMUST00000121177 Gm5383-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000163579 Gm9064-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000118087 Gm13351-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000167880 Sbf2-006 retained_intron Mus_musculus 0 364
ENSMUST00000117573 Gm15678-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000153709 Taok3-005 retained_intron Mus_musculus 5.99756e-43 180
ENSMUST00000122820 Spata6-002 processed_transcript Mus_musculus 1e-24 119

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