C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000411529 HNRNPA3-002 ENSG00000170144 9606 + 2:177212749-177223958 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000411529
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000411529 17.455±0.00 29.113±0.00 14.854±8.54 12.780±1.54 16.477±4.85 3.749±3.08 11.712±6.46 7.914±0.74 15.732±10.03 4.278±2.12 19.565±10.00 11.094±1.16 13.409±4.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_00017S CIL_00017S_0001 CGP 2:176269395-177223958
CIL_00017P CIL_00017P_0001 CGP 2:177212563-177392697

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0030529 TAS ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111962 Hnrnpa3-001 protein_coding Mus_musculus 0 3088
ENSMUST00000111964 Hnrnpa3-002 protein_coding Mus_musculus 0 2471
ENSMUST00000091130 Gm5641-201 protein_coding Mus_musculus 0 2409
ENSMUST00000071732 Gm6793-201 protein_coding Mus_musculus 0 2257
ENSMUST00000121942 Gm6161-001 processed_pseudogene Mus_musculus 0 1705
ENSMUST00000164947 Hnrnpa3-202 protein_coding Mus_musculus 0 1659
ENSMUST00000117582 Gm5940-001 processed_pseudogene Mus_musculus 0 1657
ENSMUST00000090792 Hnrnpa3-201 protein_coding Mus_musculus 0 1655
ENSMUST00000177820 Gm9242-201 protein_coding Mus_musculus 0 1653
ENSMUST00000161973 Gm6397-001 processed_pseudogene Mus_musculus 0 1633
ENSMUST00000168178 Gm6254-001 processed_pseudogene Mus_musculus 0 1629
ENSMUST00000120017 Gm12960-001 processed_pseudogene Mus_musculus 0 1628
ENSMUST00000119652 Gm11991-001 processed_pseudogene Mus_musculus 0 1604
ENSMUST00000117287 Gm14398-001 processed_pseudogene Mus_musculus 0 1585
ENSMUST00000111961 Hnrnpa3-003 protein_coding Mus_musculus 0 1554
ENSMUST00000125165 Gm11847-001 processed_pseudogene Mus_musculus 0 1537
ENSMUST00000119643 Gm6758-001 processed_pseudogene Mus_musculus 0 1476
ENSMUST00000172004 Gm6153-001 processed_pseudogene Mus_musculus 0 1471
ENSMUST00000120104 Gm12129-001 processed_pseudogene Mus_musculus 0 1463
ENSMUST00000122378 Gm14730-001 processed_pseudogene Mus_musculus 0 1463
ENSMUST00000119775 Gm6506-001 processed_pseudogene Mus_musculus 0 1424
ENSMUST00000119765 Gm9431-001 processed_pseudogene Mus_musculus 0 1406
ENSMUST00000032395 Gm7399-001 processed_pseudogene Mus_musculus 0 1308
ENSMUST00000185178 Gm17190-002 protein_coding Mus_musculus 0 1262
ENSMUST00000166043 Gm17082-001 processed_pseudogene Mus_musculus 0 1234
ENSMUST00000191574 RP24-177N20.1-001 processed_pseudogene Mus_musculus 0 1232
ENSMUST00000089593 Gm7551-201 processed_pseudogene Mus_musculus 0 1227
ENSMUST00000120507 Gm12961-001 processed_pseudogene Mus_musculus 0 1120
ENSMUST00000073014 Gm8991-201 protein_coding Mus_musculus 0 1014
ENSMUST00000184369 Gm17190-001 translated_processed_pseudogene Mus_musculus 0 990
ENSMUST00000141974 Hnrnpa3-004 protein_coding Mus_musculus 0 907
ENSMUST00000121434 Gm14052-001 processed_pseudogene Mus_musculus 0 891
ENSMUST00000189662 RP23-472J11.2-001 processed_pseudogene Mus_musculus 0 883
ENSMUST00000117756 Gm12194-001 processed_pseudogene Mus_musculus 0 883
ENSMUST00000119037 Gm12986-001 processed_pseudogene Mus_musculus 0 854
ENSMUST00000119442 Gm13369-001 processed_pseudogene Mus_musculus 0 795
ENSMUST00000120487 Gm12229-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000121177 Gm5383-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000163579 Gm9064-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000132392 Hnrnpa3-005 retained_intron Mus_musculus 0 414
ENSMUST00000118087 Gm13351-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000167880 Sbf2-006 retained_intron Mus_musculus 0 364
ENSMUST00000117573 Gm15678-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000153709 Taok3-005 retained_intron Mus_musculus 1.99965e-42 180
ENSMUST00000122820 Spata6-002 processed_transcript Mus_musculus 4e-24 119

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