C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000548688 HNRNPA1-013 ENSG00000135486 9606 + 12:54281006-54282626 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TM CIL_0002TM_0002 CGP 12:54230940-54287088
CIL_0002TL CIL_0002TL_0002 CGP 12:54280193-54301121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0045111 IDA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 870
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 870
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 870
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 870
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 859
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 843
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 815
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 804
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 778
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 697
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000189260 RP23-389M9.4-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 507
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000183590 Gm5269-002 protein_coding Mus_musculus 2e-38 163

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