C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330752 HNRNPA1-023 ENSG00000135486 9606 + 12:54280775-54284881 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryENST00000330752
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary
ENST00000330752 8.154±0.00 14.424±0.00 16.924±0.00 14.885±0.00 4.795±0.00 15.780±0.00 19.665±0.00 9.835±0.00 118.222±94.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TM CIL_0002TM_0002 CGP 12:54230940-54287088
CIL_0002TL CIL_0002TL_0002 CGP 12:54280193-54301121

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 965
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 965
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 942
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 942
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 915
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 907
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 887
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 874
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 850
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 756
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 0 675
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 645
ENSMUST00000189260 RP23-389M9.4-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 547
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000183590 Gm5269-002 protein_coding Mus_musculus 4e-38 163

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