C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7a pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541658 RPL7AP3-001 ENSG00000256243 9606 - 14:35235180-35235651 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLungOvaryTestisENST00000541658
Transcript ID Adrenal Brain Breast Kidney Lung Ovary Testis
ENST00000541658 0.072±0.00 0.309±0.00 0.109±0.00 1.173±0.00 0.035±0.00 0.091±0.03 0.065±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028P CIL_00028P_0001 CGP 14:35085467-35277614
CIL_00045I CIL_00045I_0001 CGP 14:35122549-35317493

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085365 Gm16477-001 processed_pseudogene Mus_musculus 0 484
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000118791 Rpl7a-ps11-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000190511 RP23-58N8.1-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000071172 RP23-58N8.4-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000120676 Gm12712-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000185009 Gm14214-001 translated_processed_pseudogene Mus_musculus 0 468
ENSMUST00000184654 Gm14214-002 protein_coding Mus_musculus 0 468
ENSMUST00000102898 Rpl7a-001 protein_coding Mus_musculus 0 468
ENSMUST00000094754 Rpl7a-ps8-201 protein_coding Mus_musculus 0 468
ENSMUST00000116081 Gm14853-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000071565 Gm4978-201 protein_coding Mus_musculus 0 462
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 460
ENSMUST00000190579 Rpl7a-ps10-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000189720 RP23-321G17.2-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000117240 Gm11989-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000121575 Gm12630-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000119629 Gm11979-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000191231 RP24-217I2.2-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000118638 Gm13039-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000095218 Rpl7a-ps5-201 protein_coding Mus_musculus 0 435
ENSMUST00000162120 Gm7418-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000161633 Gm5766-001 transcribed_processed_pseudogene Mus_musculus 0 422
ENSMUST00000160520 Gm5766-002 processed_transcript Mus_musculus 0 422
ENSMUST00000171395 Gm8425-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000121823 Gm5257-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000171235 Gm5459-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000104977 Gm4877-201 protein_coding Mus_musculus 0 407
ENSMUST00000139800 Gm5353-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000119589 Gm16071-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000143678 Rpl7a-003 processed_transcript Mus_musculus 0 375
ENSMUST00000118615 Gm13183-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000117439 Gm12385-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000118766 Gm16198-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000165944 RP24-170M24.1-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000136269 Rpl7a-002 processed_transcript Mus_musculus 0 340
ENSMUST00000120981 Gm12593-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000120504 Gm12124-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000122273 Gm12269-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000188170 RP23-248N10.1-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000118973 Gm15617-001 processed_pseudogene Mus_musculus 0 307
ENSMUST00000117118 Rpl7a-ps9-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000118838 Gm11362-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000137376 Rpl7a-004 processed_transcript Mus_musculus 0 285
ENSMUST00000129972 Gm16304-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000172650 Gm7393-001 processed_pseudogene Mus_musculus 9.94922e-44 180
ENSMUST00000121538 Gm14156-001 processed_pseudogene Mus_musculus 5.00264e-43 178
ENSMUST00000160362 Gm2976-001 processed_pseudogene Mus_musculus 3e-40 169
ENSMUST00000119680 Gm15702-001 processed_pseudogene Mus_musculus 2e-37 159
ENSMUST00000166414 Gm17097-001 processed_pseudogene Mus_musculus 8e-36 154
ENSMUST00000129673 Rpl7a-005 processed_transcript Mus_musculus 6e-17 92
ENSMUST00000118404 Gm12713-001 processed_pseudogene Mus_musculus 0.000000001 68

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