C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000574671 ACTG1-008 ENSG00000184009 9606 - 17:81509999-81511848 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLungMuscleENST00000574671
Transcript ID Bladder Lung Muscle
ENST00000574671 33.241±0.00 24.499±0.00 18.416±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YF CIL_0004YF_0001 CGP 17:81395475-81523847

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1404
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1404
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 1005
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1005
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 968
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 961
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 961
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 946
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 928
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 918
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 902
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 885
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 811
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 758
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 752
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 736
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 730
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 726
ENSDART00000080664 protein_coding Danio_rerio 0 695
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 664
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 662
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 643
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 636
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 636
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 636
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 636
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 571
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 555
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 521
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 459
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 418
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 355
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 316
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 206

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