C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000570382 ACTG1-014 ENSG00000184009 9606 - 17:81511519-81512799 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000570382
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000570382 138.758±0.00 166.083±0.00 194.684±0.00 289.381±0.00 29.120±0.00 43.767±0.00 144.278±0.00 132.672±0.00 31.781±0.00 199.565±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YF CIL_0004YF_0001 CGP 17:81395475-81523847

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 473
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 473
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 473
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 473
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 468
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 459
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 414
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 414
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 414
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 414
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 414
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 405
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 370
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 326
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 311
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 311
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 303
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 292
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 278
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 278
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 0 222
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 211

Loading