C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000615544 ACTG1-201 ENSG00000184009 9606 - 17:81509973-81512755 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000615544
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000615544 480.467±0.00 313.449±0.00 260.889±0.00 142.246±115.35 192.800±115.44 27.436±0.00 86.093±74.92 135.661±0.00 683.612±0.00 64.690±0.00 315.290±133.33 310.572±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YF CIL_0004YF_0001 CGP 17:81395475-81523847

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001895 IEP retina homeostasis
GO:0005200 IC structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005856 TAS cytoskeleton
GO:0006928 TAS cellular component movement
GO:0007411 TAS axon guidance
GO:0016020 IDA membrane
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0042802 IPI identical protein binding
GO:0045087 TAS innate immune response
GO:0045216 TAS cell-cell junction organization
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome
GO:0070527 IMP platelet aggregation
GO:0072562 IDA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1722
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1705
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 1450
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1430
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 1375
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 1321
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 1321
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 1256
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 1195
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 1168
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 1158
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 1157
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 1118
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 1027
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 1014
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 1009
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 1005
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 998
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 996
ENSDART00000080664 protein_coding Danio_rerio 0 996
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 979
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 976
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 924
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 924
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 924
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 924
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 885
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 863
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 857
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 846
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 793
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 752
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 745
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 678
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 630
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 534
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 521
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 508
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 503
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 459
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 431
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 0 366
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 366
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 327
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 316
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 0 222

Loading