C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000572105 ACTG1-015 ENSG00000184009 9606 - 17:81510745-81512781 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverLungMuscleOvaryENST00000572105
Transcript ID Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000572105 24.879±0.00 56.397±0.00 68.762±0.00 8.822±0.00 17.322±0.00 37.771±0.00 28.351±0.00 15.803±0.00 51.754±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YF CIL_0004YF_0001 CGP 17:81395475-81523847

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 1434
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 1090
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 926
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 926
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 885
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 885
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 885
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 869
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 869
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 857
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 856
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 854
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 854
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 830
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 758
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 736
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 676
ENSDART00000080664 protein_coding Danio_rerio 0 658
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 643
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 610
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 584
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 584
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 584
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 584
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 573
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 558
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 556
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 505
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 497
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 459
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 433
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 431
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 379
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 0 368
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 344
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 344
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 340
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 329
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 322
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 322
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 316
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 278
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 276
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 0 222

Loading