C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000576209 ACTG1-009 ENSG00000184009 9606 - 17:81510005-81512150 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryPlacentaTestisENST00000576209
Transcript ID Muscle Ovary Placenta Testis
ENST00000576209 9.242±0.00 895.136±0.00 950.837±501.54 187.119±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YF CIL_0004YF_0001 CGP 17:81395475-81523847

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1720
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1720
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1327
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 1295
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 1232
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 1232
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 1225
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 1168
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 1134
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 1131
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 1122
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 1068
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 1051
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 1005
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 970
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 961
ENSDART00000080664 protein_coding Danio_rerio 0 944
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 931
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 928
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 917
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 909
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 905
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 905
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 905
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 905
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 893
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 885
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 798
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 797
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 793
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 752
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 730
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 725
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 682
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 630
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 521
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 459
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 431
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 353
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 337
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 327
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 327
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 316
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 0 278
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 278
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 0 224

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