C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000575994 ACTG1-011 ENSG00000184009 9606 - 17:81511346-81523847 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YF CIL_0004YF_0001 CGP 17:81395475-81523847

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 861
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 852
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 852
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 848
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 821
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 817
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 787
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 730
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 702
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 702
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 641
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 614
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 592
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 592
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 580
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 575
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 553
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 534
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 516
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 505
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 501
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 497
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 497
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 486
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 435
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 435
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 392
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 0 366
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 366
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 366
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 327
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 0 222
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 206

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