C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000473808 RP11-254G11.1-001 ENSG00000244527 9606 - 18:21119182-21119661 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000473808
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000473808 0.055±0.00 0.313±0.00 0.143±0.00 0.140±0.00 0.131±0.00 0.053±0.00 0.086±0.03 0.051±0.00 0.107±0.00 0.127±0.00 0.046±0.00 0.051±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005O1 CIL_0005O1_0001 CGP 18:20946906-21525417

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 527
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 527
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 527
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 505
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000119332 Gm13604-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 488
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 488
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 483
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 0 483
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 477
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 472
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 460
ENSMUST00000118772 Gm11975-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000120607 Gm13525-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 344
ENSMUST00000117461 Gm14657-001 processed_pseudogene Mus_musculus 0 263
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 239
ENSDART00000002595 rpl21-001 protein_coding Danio_rerio 0 235
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 2.8026e-45 185
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 5.00264e-43 178
ENSMUST00000119221 Gm12934-001 processed_pseudogene Mus_musculus 6e-37 158
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 2e-22 110

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