C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L29 pseudogene 24
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465434 RPL29P24-001 ENSG00000241030 9606 - 12:120522664-120523443 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000465434
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000465434 0.132±0.00 0.332±0.00 0.318±0.00 0.659±0.00 0.139±0.00 0.129±0.00 0.442±0.00 0.042±0.00 0.568±0.00 0.290±0.00 0.088±0.02 0.152±0.00 0.178±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694
CIL_0007ZA CIL_0007ZA_0001 VISTA 12:120240385-120840841

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119110 Gm12447-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000075962 Gm6344-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000059802 Rpl29-002 protein_coding Mus_musculus 0 296
ENSMUST00000150576 Rpl29-001 protein_coding Mus_musculus 0 296
ENSMUST00000128641 Uimc1-003 retained_intron Mus_musculus 0 296
ENSMUST00000118829 Gm13841-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000178557 Gm8210-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000179718 Gm15454-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000098994 Gm10709-201 protein_coding Mus_musculus 0 291
ENSMUST00000118248 Gm14036-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000121282 Gm12508-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000119668 Gm13213-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000133732 Gm10913-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000077493 Gm8412-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000075321 Gm4889-201 protein_coding Mus_musculus 0 283
ENSMUST00000117685 Gm11270-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000120582 Gm15467-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000147424 4931440P22Rik-003 processed_transcript Mus_musculus 0 276
ENSMUST00000163749 Gm17669-201 protein_coding Mus_musculus 0 276
ENSMUST00000119789 Gm12704-001 processed_pseudogene Mus_musculus 0 274
ENSMUST00000117972 Gm8482-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000178932 Gm5561-201 processed_pseudogene Mus_musculus 0 268
ENSMUST00000105038 Gm3550-201 protein_coding Mus_musculus 0 268
ENSMUST00000165672 Gm10548-002 transcribed_processed_pseudogene Mus_musculus 0 265
ENSMUST00000097631 Gm10548-001 transcribed_processed_pseudogene Mus_musculus 0 265
ENSMUST00000160295 Gm8580-001 processed_pseudogene Mus_musculus 0 263
ENSMUST00000172270 Gm5218-201 protein_coding Mus_musculus 0 259
ENSMUST00000120700 Gm12723-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000117417 Gm13141-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000112504 Gm15526-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000119044 Gm13545-001 processed_pseudogene Mus_musculus 0 241
ENSMUST00000121617 Gm12340-001 unprocessed_pseudogene Mus_musculus 0 233
ENSMUST00000176181 Gm20702-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000161107 Gm16298-001 processed_pseudogene Mus_musculus 0 204
ENSMUST00000186887 RP23-186M2.2-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000119411 Gm13921-001 processed_pseudogene Mus_musculus 0 191
ENSDART00000111140 RPL29-201 protein_coding Danio_rerio 1.99965e-42 176
ENSMUST00000161849 Rpl29-ps1-001 processed_pseudogene Mus_musculus 7.00005e-41 171
ENSMUST00000119890 Gm8832-001 processed_pseudogene Mus_musculus 2e-32 143
ENSMUST00000186496 RP23-464K22.5-001 processed_pseudogene Mus_musculus 2e-21 106
ENSMUST00000120443 Gm11676-001 processed_pseudogene Mus_musculus 8e-21 104

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