C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high-mobility group box 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000111964 hmgb1a-201 ENSDARG00000079772 7955 - 10:37242189-37246980 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000111964
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000111964 277.840±85.21 154.835±62.63 106.597±8.20 3.472±0.00 45.648±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005886 IDA plasma membrane
GO:0009409 IDA response to cold
GO:0030900 IMP forebrain development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073196 Gm10075-201 pseudogene Mus_musculus 0 268
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 241
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 3e-21 106
ENSMUST00000120842 Gm8152-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000120873 Gm13932-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000128343 Gm3160-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000162402 Gm16318-001 processed_pseudogene Mus_musculus 4e-20 102
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000184467 Gm7870-001 processed_pseudogene Mus_musculus 0 200

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