C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12118
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119766 Gm12118-001 ENSMUSG00000083471 10090 + 11:33438449-33438980 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverPlacentaTestisENSMUST00000119766
Transcript ID Bladder Brain Breast Liver Placenta Testis
ENSMUST00000119766 0.021±0.00 0.115±0.02 0.158±0.05 0.057±0.03 0.046±0.02 0.101±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092S CIL_00092S_0002 VISTA 11:32891798-33493112
CIL_00097F CIL_00097F_0002 VISTA 11:32999598-33601607
CIL_00088M CIL_00088M_0002 VISTA 11:33042866-33643782
CIL_000977 CIL_000977_0002 VISTA 11:33092412-33693558
CIL_00098H CIL_00098H_0002 VISTA 11:33099828-33701076
CIL_0008SG CIL_0008SG_0002 VISTA 11:33129906-33731024

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111964 hmgb1a-201 protein_coding Danio_rerio 0 241
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 555
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 468
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 549
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 549
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 516
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 468
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 549
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 394
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 549
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 372
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 459
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 283
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 401
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 403
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 411
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 427
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 195
ENST00000468402 HMGB1P25-001 processed_pseudogene Homo_sapiens 0 235
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 274
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 527
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 200
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 540
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 5e-36 154
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 472

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