C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 3160
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128343 Gm3160-001 ENSMUSG00000085371 10090 + 8:14136310-14136916 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLiverOvaryPlacentaTestisENSMUST00000128343
Transcript ID Brain Breast Liver Ovary Placenta Testis
ENSMUST00000128343 0.275±0.24 0.296±0.00 0.012±0.00 0.118±0.00 0.180±0.10 0.073±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VU CIL_0007VU_0002 VISTA 8:13771980-14374029

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111964 hmgb1a-201 protein_coding Danio_rerio 0 272
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 5e-19 99
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 7e-19 99
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 2e-18 99
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 5e-18 99
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 1e-18 99
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 1e-18 99
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 3e-18 99
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 540
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 521
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0.00000000003 73
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 4e-19 99
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 5e-19 99
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 645

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