C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1, pseudogene 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000181542 Hmgb1-ps8-001 ENSMUSG00000097295 10090 - 10:22262742-22263367 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000181542
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000181542 0.083±0.01 0.513±0.02 0.289±0.24 1.160±0.58 0.231±0.07 0.244±0.13 0.120±0.03 0.576±0.34 0.507±0.19 4.238±1.28 0.865±0.56 0.222±0.13 0.209±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111964 hmgb1a-201 protein_coding Danio_rerio 0 283
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 761
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 584
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 754
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 754
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 643
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 584
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 754
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 483
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 754
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 490
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 608
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 608
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 364
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 571
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 475
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 590
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 520
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 200
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 217
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 340
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 702
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 237
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 734
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 1.96182e-44 182
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 606

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