C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 10075
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073196 Gm10075-201 ENSMUSG00000060128 10090 - 1:19153310-19153966 pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverMuscleOvaryENSMUST00000073196
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Muscle Ovary
ENSMUST00000073196 0.740±0.00 7.582±2.06 6.780±1.30 1.374±1.25 0.430±0.00 0.411±0.00 15.220±9.14 0.974±0.00 0.855±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MC CIL_0007MC_0006 UCNEbase 1:18307438-19700223
CIL_000813 CIL_000813_0002 VISTA 1:18655282-19257504
CIL_00096L CIL_00096L_0002 VISTA 1:18806734-19407712
CIL_0005MY CIL_0005MY_0002 CGP 1:19103022-19238576

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111964 hmgb1a-201 protein_coding Danio_rerio 0 268
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 505
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 737
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 737
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 505
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 737
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 737
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 370
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 520
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 291
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 647
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 305
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 721

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