C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 7870
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000184467 Gm7870-001 ENSMUSG00000098412 10090 + 9:72209555-72210170 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverLungMuscleOvaryPlacentaTestisENSMUST00000184467
Transcript ID Brain Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000184467 0.156±0.09 0.024±0.01 0.100±0.00 0.150±0.03 0.259±0.23 0.149±0.00 0.080±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TG CIL_0007TG_0002 VISTA 9:71674986-72275900
CIL_0008VA CIL_0008VA_0002 VISTA 9:71675967-72276730
CIL_0004OY CIL_0004OY_0002 CGP 9:71842688-72363777

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111964 hmgb1a-201 protein_coding Danio_rerio 0 200
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 638
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 431
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 610
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 610
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 523
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 431
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 610
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 610
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 279
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 455
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 499
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 425
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 200
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 592
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 2e-34 148
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 507

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