C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8152
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120842 Gm8152-001 ENSMUSG00000081798 10090 - 5:107381381-107382017 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120842
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120842 0.489±0.14 0.643±0.00 0.378±0.13 0.495±0.24 0.264±0.17 0.113±0.05 0.255±0.13 0.183±0.20 0.499±0.02 0.084±0.00 1.780±1.61 0.038±0.00 0.585±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DI CIL_0008DI_0002 VISTA 5:106921760-107524214
CIL_0008YV CIL_0008YV_0002 VISTA 5:106950899-107552442
CIL_0005ZR CIL_0005ZR_0002 CGP 5:107106570-107387058
CIL_0005ZS CIL_0005ZS_0002 CGP 5:107331159-107430035

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111964 hmgb1a-201 protein_coding Danio_rerio 0 250
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 715
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 529
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 704
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 704
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 529
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 704
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 704
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 569
ENST00000435986 HMGB1P45-001 processed_pseudogene Homo_sapiens 0 440
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 542
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 494
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 191
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 665
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 691
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 608

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