C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13902
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120168 Gm13902-001 ENSMUSG00000084164 10090 - 2:106926565-106927169 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverOvaryPlacentaTestisENSMUST00000120168
Transcript ID Bladder Brain Breast Liver Ovary Placenta Testis
ENSMUST00000120168 0.014±0.00 0.063±0.01 0.114±0.00 0.028±0.02 0.321±0.17 0.047±0.04 0.220±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111964 hmgb1a-201 protein_coding Danio_rerio 3e-21 106
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 374
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 374
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 374
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 374
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 350
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 374
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 374
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 440
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 374
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 303
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 344
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 5e-37 158
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 261
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 296
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 239
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 241
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 6.99949e-42 174
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 6e-28 128
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 363
ENST00000556977 TTLL5-002 protein_coding Homo_sapiens 0.000003 58
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 209
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 368
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 2.99878e-43 178
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 329

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