C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21-ps13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072532 Rpl21-ps13-201 ENSMUSG00000056777 10090 + 7:139719399-139719881 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000072532
Transcript ID Adipose Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000072532 0.126±0.00 0.044±0.00 0.092±0.09 0.018±0.00 0.102±0.00 0.260±0.00 0.124±0.10 0.372±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000BC CIL_0000BC_0002 CGP 7:139638778-139878088

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000247219 TBPL2-001 protein_coding Homo_sapiens 0 237
ENST00000272274 RPL21-003 protein_coding Homo_sapiens 0 549
ENST00000311549 RPL21-001 protein_coding Homo_sapiens 0 549
ENST00000319826 RPL21-004 protein_coding Homo_sapiens 0 549
ENST00000326092 RPL21-005 protein_coding Homo_sapiens 0 549
ENST00000395517 RPL21P3-001 processed_pseudogene Homo_sapiens 0 460
ENST00000396599 RPL21P75-001 processed_pseudogene Homo_sapiens 0 544
ENST00000403842 RP11-203F10.6-001 processed_pseudogene Homo_sapiens 0 505
ENST00000416102 AC017079.4-001 processed_pseudogene Homo_sapiens 0 379
ENST00000418441 RP11-151F5.2-001 processed_pseudogene Homo_sapiens 0 505
ENST00000423231 RP11-26H16.1-001 processed_pseudogene Homo_sapiens 0 477
ENST00000433345 RPL21P110-001 processed_pseudogene Homo_sapiens 0 261
ENST00000433493 RP5-859M6.1-001 processed_pseudogene Homo_sapiens 0 294
ENST00000441274 RP11-490K7.1-001 processed_pseudogene Homo_sapiens 0 405
ENST00000442539 RPL21P135-001 processed_pseudogene Homo_sapiens 3e-27 126
ENST00000443666 RPL21P133-001 processed_pseudogene Homo_sapiens 0 331
ENST00000453468 RPL21P134-001 processed_pseudogene Homo_sapiens 0 488
ENST00000454675 AC092155.1-001 processed_pseudogene Homo_sapiens 0 483
ENST00000461690 RPL21-007 nonsense_mediated_decay Homo_sapiens 0 521
ENST00000463605 RPL21P39-001 processed_pseudogene Homo_sapiens 0 499
ENST00000465083 RPL21P8-001 processed_pseudogene Homo_sapiens 0 235
ENST00000465295 RP11-30K9.1-001 processed_pseudogene Homo_sapiens 0 449
ENST00000466550 RPL21-006 retained_intron Homo_sapiens 0 311
ENST00000472093 RP11-267J23.1-001 processed_pseudogene Homo_sapiens 0 348
ENST00000472975 RP11-112N19.2-001 processed_pseudogene Homo_sapiens 0 462
ENST00000479171 RPL21P6-001 processed_pseudogene Homo_sapiens 0 237
ENST00000480465 RP11-492M23.2-001 processed_pseudogene Homo_sapiens 0 514
ENST00000482506 RPL21P116-001 processed_pseudogene Homo_sapiens 0 483
ENST00000482905 RPL21P120-001 processed_pseudogene Homo_sapiens 0 464
ENST00000484462 RPL21P119-001 processed_pseudogene Homo_sapiens 0 529
ENST00000485945 RP11-613M5.2-001 processed_pseudogene Homo_sapiens 0 520
ENST00000487382 CTD-2158P22.1-001 processed_pseudogene Homo_sapiens 0 368
ENST00000488289 RP13-585F24.1-001 processed_pseudogene Homo_sapiens 0 521
ENST00000491732 RPL21P129-001 processed_pseudogene Homo_sapiens 0 409
ENST00000493317 RPL21-009 protein_coding Homo_sapiens 0 436
ENST00000493466 RP11-9D8.1-001 processed_pseudogene Homo_sapiens 0 455
ENST00000495531 RP11-572P18.1-001 processed_pseudogene Homo_sapiens 0 549
ENST00000496412 CTD-2290C23.2-001 processed_pseudogene Homo_sapiens 0 416
ENST00000600955 RP1-228H13.1-001 processed_pseudogene Homo_sapiens 0 473

Loading