C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000472093 RP11-267J23.1-001 ENSG00000242405 9606 + 12:12155262-12155772 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungMuscleOvaryTestisENST00000472093
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Muscle Ovary Testis
ENST00000472093 0.049±0.00 0.102±0.00 0.202±0.00 0.098±0.00 0.207±0.00 0.046±0.00 0.238±0.00 0.116±0.00 0.156±0.00 0.045±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000K4 CIL_0000K4_0001 CGP 12:11649854-12211084
CIL_0003HK CIL_0003HK_0001 CGP 12:12049844-12267012
CIL_0006X9 CIL_0006X9_0002 CGP 12:12116025-12350541

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 370
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 351
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000072532 Rpl21-ps13-201 processed_pseudogene Mus_musculus 0 348
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 348
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 348
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 348
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 342
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000071237 Rpl21-ps10-201 processed_pseudogene Mus_musculus 0 337
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 335
ENSMUST00000074828 Rpl21-ps6-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000080223 Rpl21-ps3-201 processed_pseudogene Mus_musculus 0 331
ENSMUST00000119897 Rpl21-ps9-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 326
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 326
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 326
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 324
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 0 322
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 309
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000080097 Gm16415-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 298
ENSMUST00000120607 Gm13525-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000121754 Gm12618-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000117320 Gm15578-001 unprocessed_pseudogene Mus_musculus 0 292
ENSMUST00000079153 Gm8526-201 processed_pseudogene Mus_musculus 0 292
ENSMUST00000141391 Gm11281-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000080061 Gm8724-201 processed_pseudogene Mus_musculus 0 220
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 204
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000119382 Gm14106-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 6.99949e-42 174
ENSMUST00000170118 Gm17113-001 processed_pseudogene Mus_musculus 1e-23 113
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 4e-19 99

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