C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000416102 AC017079.4-001 ENSG00000238180 9606 + 2:128217588-128218072 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLungMuscleOvaryTestisENST00000416102
Transcript ID Adrenal Brain Breast Heart Kidney Lung Muscle Ovary Testis
ENST00000416102 0.221±0.00 0.166±0.00 0.081±0.00 0.026±0.00 0.027±0.00 0.026±0.00 0.074±0.00 0.044±0.00 0.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WO CIL_0002WO_0002 CGP 2:128091200-128318577

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119897 Rpl21-ps9-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 407
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 407
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 407
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 390
ENSMUST00000071237 Rpl21-ps10-201 processed_pseudogene Mus_musculus 0 390
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 387
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 385
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 385
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 381
ENSMUST00000080223 Rpl21-ps3-201 processed_pseudogene Mus_musculus 0 379
ENSMUST00000072532 Rpl21-ps13-201 processed_pseudogene Mus_musculus 0 379
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 375
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 0 374
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 364
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 363
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000080097 Gm16415-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000121754 Gm12618-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000141391 Gm11281-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000117320 Gm15578-001 unprocessed_pseudogene Mus_musculus 0 327
ENSMUST00000079153 Gm8526-201 processed_pseudogene Mus_musculus 0 311
ENSMUST00000074828 Rpl21-ps6-001 processed_pseudogene Mus_musculus 0 307
ENSMUST00000080061 Gm8724-201 processed_pseudogene Mus_musculus 0 307
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 296
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000119382 Gm14106-001 processed_pseudogene Mus_musculus 0 195
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 1.4013e-45 187
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 5e-38 161
ENSMUST00000170118 Gm17113-001 processed_pseudogene Mus_musculus 4e-24 115

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