C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488289 RP13-585F24.1-001 ENSG00000241612 9606 + 4:19813749-19814231 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000488289
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000488289 0.053±0.00 0.246±0.00 0.081±0.00 0.120±0.07 0.100±0.00 0.026±0.00 0.146±0.07 0.259±0.00 0.174±0.00 0.323±0.40 0.397±0.04 0.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OP CIL_0002OP_0001 CGP 4:17841199-20620561

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 566
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 566
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 566
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 549
ENSMUST00000071237 Rpl21-ps10-201 processed_pseudogene Mus_musculus 0 544
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 538
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000119332 Gm13604-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 527
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000072532 Rpl21-ps13-201 processed_pseudogene Mus_musculus 0 521
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 520
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 516
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 516
ENSMUST00000119897 Rpl21-ps9-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000080223 Rpl21-ps3-201 processed_pseudogene Mus_musculus 0 510
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 0 510
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000118772 Gm11975-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 499
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 497
ENSMUST00000080097 Gm16415-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000121754 Gm12618-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000074828 Rpl21-ps6-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000141391 Gm11281-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000079153 Gm8526-201 processed_pseudogene Mus_musculus 0 438
ENSMUST00000080061 Gm8724-201 processed_pseudogene Mus_musculus 0 427
ENSMUST00000117320 Gm15578-001 unprocessed_pseudogene Mus_musculus 0 420
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 370
ENSMUST00000117461 Gm14657-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000119382 Gm14106-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 217
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 9.94922e-44 180
ENSMUST00000119221 Gm12934-001 processed_pseudogene Mus_musculus 1.99993e-41 172
ENSMUST00000170118 Gm17113-001 processed_pseudogene Mus_musculus 1e-29 134
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 8e-21 104

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