C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000403842 RP11-203F10.6-001 ENSG00000219133 9606 - 1:204346776-204347258 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000403842
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000403842 0.084±0.00 0.232±0.00 0.121±0.00 0.460±0.43 0.390±0.36 0.179±0.01 0.027±0.00 0.029±0.00 0.108±0.00 0.055±0.00 0.104±0.00 0.358±0.28 0.591±0.00 0.058±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084Z CIL_00084Z_0001 VISTA 1:204154830-204755807
CIL_00046J CIL_00046J_0002 CGP 1:204198160-204377665

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 560
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 560
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 560
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000071237 Rpl21-ps10-201 processed_pseudogene Mus_musculus 0 538
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 532
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 521
ENSMUST00000119332 Gm13604-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 516
ENSMUST00000119897 Rpl21-ps9-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 510
ENSMUST00000080223 Rpl21-ps3-201 processed_pseudogene Mus_musculus 0 510
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 0 505
ENSMUST00000072532 Rpl21-ps13-201 processed_pseudogene Mus_musculus 0 505
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 503
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 499
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 494
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000080097 Gm16415-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000121754 Gm12618-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 475
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000120348 Gm12123-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000074828 Rpl21-ps6-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000141391 Gm11281-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000117320 Gm15578-001 unprocessed_pseudogene Mus_musculus 0 431
ENSMUST00000121662 Gm14053-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000079153 Gm8526-201 processed_pseudogene Mus_musculus 0 418
ENSMUST00000080061 Gm8724-201 processed_pseudogene Mus_musculus 0 414
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 364
ENSMUST00000117461 Gm14657-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 254
ENSDART00000002595 rpl21-001 protein_coding Danio_rerio 0 239
ENSMUST00000119382 Gm14106-001 processed_pseudogene Mus_musculus 0 231
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 217
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000119221 Gm12934-001 processed_pseudogene Mus_musculus 1e-38 163
ENSMUST00000170118 Gm17113-001 processed_pseudogene Mus_musculus 5e-28 128

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