C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000438594 HMGB1P12-001 ENSG00000223904 9606 + X:111434427-111435024 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENST00000438594
Transcript ID Placenta
ENST00000438594 0.108±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 481
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 475
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 475
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 475
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 475
ENSMUST00000117548 Hmgb1-ps2-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 468
ENSMUST00000173370 Hmgb1-ps7-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000119350 Hmgb1-ps1-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000119927 Gm12331-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 396
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000073196 Gm10075-201 pseudogene Mus_musculus 0 370
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 302
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 257
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 235
ENSMUST00000123645 Hmgb1-005 retained_intron Mus_musculus 5.04467e-44 182

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