C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 3, H2a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108817 Hist3h2a-001 ENSMUSG00000078851 10090 + 11:58954685-58956830 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000108817
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000108817 13.154±11.05 18.336±3.86 12.766±2.20 23.942±14.40 14.608±8.59 12.854±6.87 5.017±3.87 13.643±6.87 5.655±4.99 24.853±4.78 5.416±1.62 16.814±8.82 3.615±1.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UC CIL_0000UC_000A CGP 11:58948920-58956830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000788 IEA nuclear nucleosome
GO:0006337 IEA nucleosome disassembly
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IEA extracellular vesicular exosome
GO:0070914 IEA UV-damage excision repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000129239 protein_coding Danio_rerio 0 281
ENST00000314088 HIST1H2AC-001 nonsense_mediated_decay Homo_sapiens 0 416
ENST00000333151 HIST1H2AJ-001 protein_coding Homo_sapiens 0 394
ENST00000358739 HIST1H2AI-001 protein_coding Homo_sapiens 0 440
ENST00000359193 HIST1H2AG-001 protein_coding Homo_sapiens 0 401
ENST00000359611 HIST1H2AM-001 protein_coding Homo_sapiens 0 346
ENST00000366695 HIST3H2A-001 protein_coding Homo_sapiens 0 457
ENST00000369163 HIST1H3H-001 protein_coding Homo_sapiens 0.000006 57
ENST00000375167 H2AFX-002 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000377459 HIST1H2AH-001 protein_coding Homo_sapiens 0 398
ENST00000377791 HIST1H2AC-201 protein_coding Homo_sapiens 0 416
ENST00000389078 H2AFJ-005 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000479986 HIST1H3J-002 processed_transcript Homo_sapiens 0 303
ENST00000501744 H2AFJ-002 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000530167 H2AFX-001 protein_coding Homo_sapiens 0 377
ENST00000544848 H2AFJ-001 protein_coding Homo_sapiens 0 320
ENST00000602637 HIST1H2AC-002 protein_coding Homo_sapiens 0 416
ENST00000612898 HIST1H2BN-001 protein_coding Homo_sapiens 0 407
ENST00000613174 HIST1H2AL-001 protein_coding Homo_sapiens 0 420
ENST00000618958 HIST1H2AK-001 protein_coding Homo_sapiens 0 407
ENST00000620438 HIST3H2BB-001 protein_coding Homo_sapiens 0.0002 53

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