C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2ac
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000314088 HIST1H2AC-001 ENSG00000180573 9606 + 6:26124145-26139116 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLiverLungOvaryPlacentaENST00000314088
Transcript ID Brain Breast Colon Liver Lung Ovary Placenta
ENST00000314088 1.419±0.00 1.856±0.00 6.255±0.00 4.722±0.00 5.902±0.00 1.245±0.00 2.153±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UC CIL_0000UC_0004 CGP 6:26114873-26139116
CIL_0001C2 CIL_0001C2_0006 CGP 6:26124145-26157050

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0008150 ND biological_process
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171127 Hist1h2ac-001 protein_coding Mus_musculus 0 488
ENSMUST00000102969 Hist1h2ae-001 protein_coding Mus_musculus 0 468
ENSMUST00000070124 Hist1h2ai-001 protein_coding Mus_musculus 0 466
ENSMUST00000091742 Hist1h2ah-001 protein_coding Mus_musculus 0 466
ENSMUST00000090776 Hist1h2ad-001 protein_coding Mus_musculus 0 460
ENSMUST00000081342 Hist1h2ap-001 protein_coding Mus_musculus 0 459
ENSMUST00000091745 Hist1h2ao-001 protein_coding Mus_musculus 0 459
ENSMUST00000091741 Hist1h2ag-001 protein_coding Mus_musculus 0 457
ENSMUST00000078369 Hist1h2ab-001 protein_coding Mus_musculus 0 457
ENSMUST00000074752 Hist1h2ak-001 protein_coding Mus_musculus 0 455
ENSMUST00000091751 Hist1h2an-001 protein_coding Mus_musculus 0 453
ENSMUST00000073261 Hist1h2af-001 protein_coding Mus_musculus 0 449
ENSMUST00000078756 Hist2h2aa2-001 protein_coding Mus_musculus 0 438
ENSMUST00000074976 Hist2h2aa1-001 protein_coding Mus_musculus 0 438
ENSMUST00000091708 Hist1h2al-201 protein_coding Mus_musculus 0 433
ENSMUST00000090782 Hist2h2ac-001 protein_coding Mus_musculus 0 418
ENSMUST00000108817 Hist3h2a-001 protein_coding Mus_musculus 0 416
ENSMUST00000047697 Trim17-002 protein_coding Mus_musculus 0 416
ENSMUST00000052686 H2afx-001 protein_coding Mus_musculus 0 401
ENSMUST00000091710 Hist1h2aj-001 unprocessed_pseudogene Mus_musculus 0 394
ENSMUST00000074556 H2afj-001 protein_coding Mus_musculus 0 379
ENSMUST00000072391 Hist1h2aa-001 protein_coding Mus_musculus 0 313
ENSMUST00000118168 Gm11336-001 unprocessed_pseudogene Mus_musculus 0 305

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