C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H2A histone family, member J
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000544848 H2AFJ-001 ENSG00000246705 9606 + 12:14774383-14775026 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000544848
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000544848 217.654±0.00 43.143±0.00 2.578±0.00 13.218±10.81 110.240±98.20 63.257±48.99 16.222±14.20 32.713±28.02 29.537±14.39 78.427±74.36 17.271±12.72 39.350±22.17 134.952±72.44 318.156±69.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HB CIL_0003HB_0001 CGP 12:14774383-14803540

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074556 H2afj-001 protein_coding Mus_musculus 0 457
ENSMUST00000090782 Hist2h2ac-001 protein_coding Mus_musculus 0 427
ENSMUST00000090776 Hist1h2ad-001 protein_coding Mus_musculus 0 425
ENSMUST00000091741 Hist1h2ag-001 protein_coding Mus_musculus 0 425
ENSMUST00000091742 Hist1h2ah-001 protein_coding Mus_musculus 0 425
ENSMUST00000091751 Hist1h2an-001 protein_coding Mus_musculus 0 420
ENSMUST00000070124 Hist1h2ai-001 protein_coding Mus_musculus 0 420
ENSMUST00000078756 Hist2h2aa2-001 protein_coding Mus_musculus 0 420
ENSMUST00000074976 Hist2h2aa1-001 protein_coding Mus_musculus 0 420
ENSMUST00000102969 Hist1h2ae-001 protein_coding Mus_musculus 0 420
ENSMUST00000073261 Hist1h2af-001 protein_coding Mus_musculus 0 420
ENSMUST00000081342 Hist1h2ap-001 protein_coding Mus_musculus 0 416
ENSMUST00000091745 Hist1h2ao-001 protein_coding Mus_musculus 0 416
ENSMUST00000171127 Hist1h2ac-001 protein_coding Mus_musculus 0 414
ENSMUST00000078369 Hist1h2ab-001 protein_coding Mus_musculus 0 411
ENSMUST00000091708 Hist1h2al-201 protein_coding Mus_musculus 0 409
ENSMUST00000074752 Hist1h2ak-001 protein_coding Mus_musculus 0 401
ENSMUST00000091710 Hist1h2aj-001 unprocessed_pseudogene Mus_musculus 0 398
ENSMUST00000052686 H2afx-001 protein_coding Mus_musculus 0 379
ENSMUST00000108817 Hist3h2a-001 protein_coding Mus_musculus 0 320
ENSMUST00000047697 Trim17-002 protein_coding Mus_musculus 0 320
ENSDART00000103013 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 307
ENSDART00000110632 protein_coding Danio_rerio 0 305
ENSDART00000102972 protein_coding Danio_rerio 0 296
ENSDART00000155501 protein_coding Danio_rerio 0 296
ENSMUST00000072391 Hist1h2aa-001 protein_coding Mus_musculus 0 285
ENSDART00000129969 si:ch211-113a14.19-001 protein_coding Danio_rerio 0 285
ENSDART00000147978 protein_coding Danio_rerio 0 274
ENSDART00000129239 protein_coding Danio_rerio 0 274
ENSDART00000073402 protein_coding Danio_rerio 0 272
ENSDART00000126259 protein_coding Danio_rerio 0 272
ENSDART00000099859 protein_coding Danio_rerio 0 267
ENSDART00000073454 protein_coding Danio_rerio 0 263
ENSDART00000108936 protein_coding Danio_rerio 0 263
ENSDART00000155060 protein_coding Danio_rerio 0 263
ENSDART00000103006 protein_coding Danio_rerio 0 263
ENSDART00000115109 protein_coding Danio_rerio 0 263
ENSDART00000114908 protein_coding Danio_rerio 0 261
ENSDART00000129403 protein_coding Danio_rerio 0 252
ENSMUST00000118168 Gm11336-001 unprocessed_pseudogene Mus_musculus 0 244

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