C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 3, H2a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366695 HIST3H2A-001 ENSG00000181218 9606 - 1:228456979-228457873 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366695
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366695 0.421±0.00 0.865±0.00 0.589±0.00 7.847±2.33 3.587±2.00 4.542±0.12 5.784±2.07 0.874±0.69 1.028±0.89 3.666±1.73 0.487±0.00 5.846±2.53 3.127±1.47 2.689±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UD CIL_0000UD_0002 CGP 1:228456979-228460470

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0000788 IDA nuclear nucleosome
GO:0003677 IDA:IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006337 IMP nucleosome disassembly
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome
GO:0070914 IMP UV-damage excision repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081342 Hist1h2ap-001 protein_coding Mus_musculus 0 564
ENSMUST00000091745 Hist1h2ao-001 protein_coding Mus_musculus 0 564
ENSMUST00000171127 Hist1h2ac-001 protein_coding Mus_musculus 0 564
ENSMUST00000070124 Hist1h2ai-001 protein_coding Mus_musculus 0 560
ENSMUST00000090776 Hist1h2ad-001 protein_coding Mus_musculus 0 555
ENSMUST00000091741 Hist1h2ag-001 protein_coding Mus_musculus 0 555
ENSMUST00000091742 Hist1h2ah-001 protein_coding Mus_musculus 0 555
ENSMUST00000102969 Hist1h2ae-001 protein_coding Mus_musculus 0 549
ENSMUST00000091751 Hist1h2an-001 protein_coding Mus_musculus 0 547
ENSMUST00000078369 Hist1h2ab-001 protein_coding Mus_musculus 0 545
ENSMUST00000074752 Hist1h2ak-001 protein_coding Mus_musculus 0 544
ENSMUST00000073261 Hist1h2af-001 protein_coding Mus_musculus 0 542
ENSMUST00000078756 Hist2h2aa2-001 protein_coding Mus_musculus 0 512
ENSMUST00000074976 Hist2h2aa1-001 protein_coding Mus_musculus 0 512
ENSMUST00000074556 H2afj-001 protein_coding Mus_musculus 0 497
ENSMUST00000091710 Hist1h2aj-001 unprocessed_pseudogene Mus_musculus 0 496
ENSMUST00000091708 Hist1h2al-201 protein_coding Mus_musculus 0 483
ENSMUST00000090782 Hist2h2ac-001 protein_coding Mus_musculus 0 468
ENSMUST00000052686 H2afx-001 protein_coding Mus_musculus 0 460
ENSMUST00000108817 Hist3h2a-001 protein_coding Mus_musculus 0 457
ENSMUST00000047697 Trim17-002 protein_coding Mus_musculus 0 457
ENSMUST00000072391 Hist1h2aa-001 protein_coding Mus_musculus 0 355
ENSMUST00000073115 Hist2h2ab-001 protein_coding Mus_musculus 0 348
ENSMUST00000118168 Gm11336-001 unprocessed_pseudogene Mus_musculus 0 344
ENSDART00000126546 protein_coding Danio_rerio 0 257

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