C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2al
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000613174 HIST1H2AL-001 ENSG00000276903 9606 + 6:27865355-27865747 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonKidneyLiverLungOvaryPlacentaENST00000613174
Transcript ID Bladder Breast Colon Kidney Liver Lung Ovary Placenta
ENST00000613174 0.716±0.00 20.818±0.00 50.846±0.00 3.795±0.00 4.738±0.00 2.506±0.00 82.130±0.00 0.199±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UC CIL_0000UC_0008 CGP 6:27837760-27865798
CIL_0001C2 CIL_0001C2_0007 CGP 6:27865355-27867529

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0008150 ND biological_process
GO:0019899 IPI enzyme binding
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090776 Hist1h2ad-001 protein_coding Mus_musculus 0 521
ENSMUST00000081342 Hist1h2ap-001 protein_coding Mus_musculus 0 521
ENSMUST00000091745 Hist1h2ao-001 protein_coding Mus_musculus 0 521
ENSMUST00000091741 Hist1h2ag-001 protein_coding Mus_musculus 0 516
ENSMUST00000070124 Hist1h2ai-001 protein_coding Mus_musculus 0 514
ENSMUST00000091742 Hist1h2ah-001 protein_coding Mus_musculus 0 514
ENSMUST00000091751 Hist1h2an-001 protein_coding Mus_musculus 0 510
ENSMUST00000102969 Hist1h2ae-001 protein_coding Mus_musculus 0 505
ENSMUST00000171127 Hist1h2ac-001 protein_coding Mus_musculus 0 505
ENSMUST00000073261 Hist1h2af-001 protein_coding Mus_musculus 0 499
ENSMUST00000078369 Hist1h2ab-001 protein_coding Mus_musculus 0 494
ENSMUST00000074752 Hist1h2ak-001 protein_coding Mus_musculus 0 492
ENSMUST00000078756 Hist2h2aa2-001 protein_coding Mus_musculus 0 475
ENSMUST00000074976 Hist2h2aa1-001 protein_coding Mus_musculus 0 475
ENSMUST00000091708 Hist1h2al-201 protein_coding Mus_musculus 0 464
ENSMUST00000090782 Hist2h2ac-001 protein_coding Mus_musculus 0 460
ENSMUST00000091710 Hist1h2aj-001 unprocessed_pseudogene Mus_musculus 0 444
ENSMUST00000108817 Hist3h2a-001 protein_coding Mus_musculus 0 420
ENSMUST00000047697 Trim17-002 protein_coding Mus_musculus 0 420
ENSMUST00000052686 H2afx-001 protein_coding Mus_musculus 0 418
ENSMUST00000074556 H2afj-001 protein_coding Mus_musculus 0 398
ENSMUST00000073115 Hist2h2ab-001 protein_coding Mus_musculus 0 337
ENSMUST00000072391 Hist1h2aa-001 protein_coding Mus_musculus 0 333
ENSMUST00000118168 Gm11336-001 unprocessed_pseudogene Mus_musculus 0 305

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