C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5187
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117317 Gm5187-001 ENSMUSG00000082362 10090 - 12:107205076-107206066 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyOvaryENSMUST00000117317
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Ovary
ENSMUST00000117317 0.106±0.08 0.131±0.00 0.025±0.02 0.074±0.01 0.062±0.00 0.031±0.00 0.039±0.02 0.041±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KT CIL_0007KT_0002 UCNEbase 12:107085268-108123079

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 990
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 745
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 972
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 990
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 990
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 787
ENST00000403053 RP1-182O16.2-001 processed_pseudogene Homo_sapiens 1e-36 158
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 689
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 684
ENST00000422905 GAPDHP67-001 processed_pseudogene Homo_sapiens 0 263
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 531
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 717
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 654
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 863
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 712
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 555
ENST00000429913 GAPDHP29-001 processed_pseudogene Homo_sapiens 0 472
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 706
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 460
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 508
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 651
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 490
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 481
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 460
ENST00000447061 GAPDHP25-001 processed_pseudogene Homo_sapiens 0 693
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 392
ENST00000449411 GAPDHP74-001 processed_pseudogene Homo_sapiens 0 337
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 612
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 915
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 459
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 745
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 745
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 749
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 761
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 760
ENST00000509132 GAPDHP66-001 processed_pseudogene Homo_sapiens 0 477
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 544
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 270
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 765
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 780
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 510
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 665
ENST00000520713 ANKRD46-009 processed_transcript Homo_sapiens 0 577
ENST00000524319 ANKRD46-003 processed_transcript Homo_sapiens 0 577
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 405
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 883

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