C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SUMO2 pseudogene 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434672 SUMO2P8-001 ENSG00000228976 9606 - 6:108618000-108618285 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000434672
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000434672 0.136±0.00 3.513±0.00 0.120±0.07 0.044±0.00 0.372±0.00 0.333±0.00 0.313±0.00 0.040±0.00 0.042±0.00 5.758±0.00 0.173±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YH CIL_0008YH_0001 VISTA 6:108288605-108890079
CIL_0001OT CIL_0001OT_0002 CGP 6:108294894-108684774

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117664 Gm10241-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000153892 Sumo2-001 protein_coding Mus_musculus 0 355
ENSMUST00000121569 Smt3h2-ps4-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000118989 Gm13690-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000117589 Sumo2-004 protein_coding Mus_musculus 0 348
ENSMUST00000121366 Gm13430-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000121185 Sumo2-003 protein_coding Mus_musculus 0 344
ENSMUST00000021084 Sumo2-002 nonsense_mediated_decay Mus_musculus 0 340
ENSMUST00000119738 Gm12335-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000117715 Gm11971-001 processed_pseudogene Mus_musculus 0 322
ENSMUST00000097581 Gm10540-201 processed_pseudogene Mus_musculus 0 311
ENSMUST00000122370 Smt3h2-ps2-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000121084 Smt3h2-ps-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000122297 Gm12755-001 unprocessed_pseudogene Mus_musculus 0 296
ENSMUST00000140844 Sumo2-006 retained_intron Mus_musculus 0 270
ENSMUST00000120751 Gm11556-001 processed_pseudogene Mus_musculus 0 267
ENSMUST00000119430 Samd8-003 protein_coding Mus_musculus 0 233
ENSMUST00000050672 Sumo2-005 retained_intron Mus_musculus 0 204
ENSMUST00000118155 Sumo2-007 protein_coding Mus_musculus 0 202
ENSMUST00000117132 Gm9836-001 processed_pseudogene Mus_musculus 0 198

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