C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SUMO2 pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000505273 SUMO2P6-001 ENSG00000249031 9606 + 5:174561776-174562063 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainLungPlacentaTestisENST00000505273
Transcript ID Adipose Brain Lung Placenta Testis
ENST00000505273 0.049±0.00 0.052±0.00 0.144±0.00 0.178±0.00 0.045±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086T CIL_00086T_0001 VISTA 5:174433171-175034831

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117664 Gm10241-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000153892 Sumo2-001 protein_coding Mus_musculus 0 407
ENSMUST00000121569 Smt3h2-ps4-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000118989 Gm13690-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000021084 Sumo2-002 nonsense_mediated_decay Mus_musculus 0 392
ENSMUST00000119738 Gm12335-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000117589 Sumo2-004 protein_coding Mus_musculus 0 387
ENSMUST00000121185 Sumo2-003 protein_coding Mus_musculus 0 379
ENSMUST00000117715 Gm11971-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000121366 Gm13430-001 processed_pseudogene Mus_musculus 0 368
ENSMUST00000121084 Smt3h2-ps-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000122370 Smt3h2-ps2-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000097581 Gm10540-201 processed_pseudogene Mus_musculus 0 357
ENSMUST00000122297 Gm12755-001 unprocessed_pseudogene Mus_musculus 0 335
ENSMUST00000140844 Sumo2-006 retained_intron Mus_musculus 0 327
ENSMUST00000120751 Gm11556-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000120621 Gm12721-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000119430 Samd8-003 protein_coding Mus_musculus 0 274
ENSMUST00000050672 Sumo2-005 retained_intron Mus_musculus 0 241
ENSMUST00000118155 Sumo2-007 protein_coding Mus_musculus 0 239
ENSMUST00000117132 Gm9836-001 processed_pseudogene Mus_musculus 0 233

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