C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12969
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120199 Gm12969-001 ENSMUSG00000084011 10090 - 4:128868393-128869396 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLiverMusclePlacentaTestisENSMUST00000120199
Transcript ID Adipose Bladder Brain Breast Heart Liver Muscle Placenta Testis
ENSMUST00000120199 0.029±0.00 0.044±0.01 0.010±0.00 0.029±0.00 0.028±0.00 0.043±0.00 0.232±0.09 0.093±0.00 0.063±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F1 CIL_0008F1_0002 VISTA 4:128414851-129016970
CIL_00097K CIL_00097K_0002 VISTA 4:128504346-129105789
CIL_0002AB CIL_0002AB_0002 CGP 4:128773088-128911328

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058384 gapdhs-001 protein_coding Danio_rerio 0 313
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 941
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 723
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 931
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 941
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 941
ENST00000398586 GAPDHP15-001 processed_pseudogene Homo_sapiens 0 438
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 749
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 689
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 678
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 654
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 852
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 588
ENST00000429913 GAPDHP29-001 processed_pseudogene Homo_sapiens 0 460
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 691
ENST00000434621 GAPDHP68-001 processed_pseudogene Homo_sapiens 0 704
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 525
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 503
ENST00000447061 GAPDHP25-001 processed_pseudogene Homo_sapiens 0 723
ENST00000449411 GAPDHP74-001 processed_pseudogene Homo_sapiens 0 348
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 876
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 481
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 723
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 723
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 676
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 776
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 765
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 732
ENST00000515281 GAPDHP70-001 processed_pseudogene Homo_sapiens 0 586
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 702
ENST00000520713 ANKRD46-009 processed_transcript Homo_sapiens 0 616
ENST00000524319 ANKRD46-003 processed_transcript Homo_sapiens 0 616
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 436
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 861

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