C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13622
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120658 Gm13622-001 ENSMUSG00000082345 10090 - 2:69737357-69737789 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120658
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120658 0.978±0.00 0.668±0.02 0.531±0.00 0.561±0.19 0.886±0.36 0.231±0.00 0.374±0.23 0.335±0.16 0.899±0.59 0.120±0.00 1.160±0.56 0.661±0.23 0.437±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GS CIL_0006GS_0002 CGP 2:69686815-69754012
CIL_0007VY CIL_0007VY_0002 VISTA 2:69698509-70299848
CIL_0004SF CIL_0004SF_0002 CGP 2:69722545-69789575

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272317 RPS27A-001 protein_coding Homo_sapiens 0 451
ENST00000329806 RP11-558O12.1-001 processed_pseudogene Homo_sapiens 0 324
ENST00000402285 RPS27A-003 protein_coding Homo_sapiens 0 451
ENST00000402798 RP11-367G18.2-001 processed_pseudogene Homo_sapiens 0 399
ENST00000404735 RPS27A-002 protein_coding Homo_sapiens 0 451
ENST00000429552 RP4-814D15.2-001 processed_pseudogene Homo_sapiens 0 407
ENST00000443181 MIR4426-001 processed_pseudogene Homo_sapiens 0 422
ENST00000449323 RPS27A-004 protein_coding Homo_sapiens 0 303
ENST00000453803 RPS27AP3-001 processed_pseudogene Homo_sapiens 0 355
ENST00000457576 RPS27AP2-001 processed_pseudogene Homo_sapiens 0 440
ENST00000468810 RPS27A-010 retained_intron Homo_sapiens 2e-37 159
ENST00000475545 RPS27AP1-001 processed_pseudogene Homo_sapiens 0 351
ENST00000477681 CTD-2015H6.2-001 processed_pseudogene Homo_sapiens 0 327
ENST00000478196 RPS27A-008 retained_intron Homo_sapiens 0 311
ENST00000492222 RP11-51O6.1-001 transcribed_processed_pseudogene Homo_sapiens 0 462
ENST00000495843 RPS27A-005 retained_intron Homo_sapiens 4e-37 159
ENST00000591758 RP11-51O6.1-002 processed_transcript Homo_sapiens 0 462
ENST00000611893 RPS27A-201 protein_coding Homo_sapiens 2e-37 159

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