C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S27a pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457576 RPS27AP2-001 ENSG00000232333 9606 + 20:17516843-17517307 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonMuscleOvaryTestisENST00000457576
Transcript ID Breast Colon Muscle Ovary Testis
ENST00000457576 0.112±0.00 0.026±0.00 0.049±0.00 0.071±0.03 0.171±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007A3 CIL_0007A3_0002 CGP 20:17226107-17569220
CIL_0002DJ CIL_0002DJ_0001 CGP 20:17493905-17609919

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102844 Rps27a-004 protein_coding Mus_musculus 0 579
ENSMUST00000102845 Rps27a-003 protein_coding Mus_musculus 0 579
ENSMUST00000119780 Gm8430-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000117559 Gm13215-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000078766 Rps27a-ps2-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000121261 Gm8317-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000121742 Gm11759-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000119963 Gm13815-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000120658 Gm13622-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000150739 Rps27a-005 processed_transcript Mus_musculus 0 431
ENSMUST00000191424 RP24-388H6.1-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000185489 RP23-125B4.3-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000160015 Gm16139-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000121696 Gm12882-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000147782 Rps27a-002 processed_transcript Mus_musculus 0 366
ENSMUST00000121502 Gm14101-001 processed_pseudogene Mus_musculus 0 307
ENSMUST00000119143 Gm15206-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000120373 Gm13532-001 processed_pseudogene Mus_musculus 0 255

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