C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S27a pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475545 RPS27AP1-001 ENSG00000242692 9606 + 17:10258762-10259232 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000475545
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000475545 0.029±0.00 0.150±0.00 0.030±0.00 0.059±0.00 0.028±0.00 0.030±0.00 0.029±0.00 0.027±0.00 0.047±0.00 0.176±0.00 0.075±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102844 Rps27a-004 protein_coding Mus_musculus 0 547
ENSMUST00000102845 Rps27a-003 protein_coding Mus_musculus 0 547
ENSMUST00000119780 Gm8430-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000117559 Gm13215-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000078766 Rps27a-ps2-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000121261 Gm8317-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000121742 Gm11759-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000150739 Rps27a-005 processed_transcript Mus_musculus 0 399
ENSMUST00000160015 Gm16139-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000120658 Gm13622-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000147782 Rps27a-002 processed_transcript Mus_musculus 0 331
ENSMUST00000121696 Gm12882-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000185489 RP23-125B4.3-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000181136 Gm27018-001 processed_pseudogene Mus_musculus 0 244

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