C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9 pseudogene 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000461606 RPL9P28-001 ENSG00000242067 9606 - 17:48691116-48691694 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLiverMuscleOvaryENST00000461606
Transcript ID Adipose Adrenal Breast Colon Liver Muscle Ovary
ENST00000461606 0.213±0.00 0.397±0.00 0.179±0.01 0.822±0.68 0.038±0.00 0.107±0.01 0.108±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120094 Rpl9-007 protein_coding Mus_musculus 0 630
ENSMUST00000057885 Rpl9-001 protein_coding Mus_musculus 0 630
ENSMUST00000140507 Rpl9-ps7-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000075549 Rpl9-ps4-201 processed_pseudogene Mus_musculus 0 625
ENSMUST00000078034 Rpl9-ps6-201 protein_coding Mus_musculus 0 625
ENSMUST00000119147 Rpl9-ps3-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000080545 Gm5451-201 processed_pseudogene Mus_musculus 0 603
ENSMUST00000121601 Gm12110-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000182502 Rpl9-ps1-002 protein_coding Mus_musculus 0 571
ENSMUST00000117199 Rpl9-ps1-001 translated_processed_pseudogene Mus_musculus 0 571
ENSMUST00000077111 RP23-4E15.2-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000120090 Gm14231-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000120661 Gm9159-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000118543 Rpl9-006 protein_coding Mus_musculus 0 501
ENSMUST00000119091 Gm8087-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000174221 Rpl9-ps5-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000173020 Gm5227-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000117749 Gm11462-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000117594 Gm12795-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000147660 Rpl9-004 retained_intron Mus_musculus 0 398
ENSMUST00000117730 Gm7206-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000121372 Gm14732-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000150815 Rpl9-005 retained_intron Mus_musculus 0 263
ENSMUST00000128074 Rpl9-002 retained_intron Mus_musculus 0 263
ENSMUST00000147966 Rpl9-009 retained_intron Mus_musculus 0 246
ENSMUST00000127874 Rpl9-003 protein_coding Mus_musculus 0 241
ENSMUST00000117292 Gm15516-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000120358 Gm15037-001 processed_pseudogene Mus_musculus 9.80909e-45 183
ENSMUST00000129885 Gm14562-001 processed_pseudogene Mus_musculus 9.99995e-41 171
ENSMUST00000140879 Rpl9-010 retained_intron Mus_musculus 4e-30 135
ENSMUST00000151917 Rpl9-008 retained_intron Mus_musculus 4e-30 135

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