C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 26
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000452520 HMGB1P26-001 ENSG00000225984 9606 - 1:229705234-229705861 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonMuscleOvaryPlacentaTestisENST00000452520
Transcript ID Colon Muscle Ovary Placenta Testis
ENST00000452520 0.038±0.00 0.019±0.00 0.038±0.00 0.060±0.00 0.019±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000611 CIL_000611_0001 CGP 1:229626234-230282124

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173370 Hmgb1-ps7-001 processed_pseudogene Mus_musculus 0 617
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 601
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 601
ENSMUST00000117548 Hmgb1-ps2-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 595
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 595
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 595
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 586
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 573
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 532
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000119350 Hmgb1-ps1-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000120842 Gm8152-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 488
ENSMUST00000120015 Gm6461-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000121589 Gm11645-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000184467 Gm7870-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 377
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 298
ENSMUST00000189012 RP23-338I1.1-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 263
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 0 241
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 1e-39 167
ENSMUST00000128343 Gm3160-001 processed_pseudogene Mus_musculus 0.00000000003 73

Loading