C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413899 HMGB1P11-001 ENSG00000230547 9606 - 1:171270954-171271590 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENST00000413899
Transcript ID Placenta
ENST00000413899 0.145±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X5 CIL_0007X5_0001 VISTA 1:170981906-171584837
CIL_000285 CIL_000285_0005 CGP 1:171185208-171285978
CIL_000285 CIL_000285_0004 CGP 1:171248471-171342084

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 712
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 710
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 706
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 704
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 704
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 704
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 704
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 699
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 695
ENSMUST00000173370 Hmgb1-ps7-001 processed_pseudogene Mus_musculus 0 689
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 689
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 667
ENSMUST00000119927 Gm12331-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 604
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 568
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000117940 Hmgb1-rs18-001 processed_pseudogene Mus_musculus 0 551
ENSMUST00000128343 Gm3160-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000120175 Gm11830-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 532
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000122269 Gm14473-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 484
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 449
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 394
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 357
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000189012 RP23-338I1.1-001 processed_pseudogene Mus_musculus 0 307
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 0 222

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