C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5218
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172270 Gm5218-201 ENSMUSG00000091198 10090 - 15:81499084-81499548 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverOvaryTestisENSMUST00000172270
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Ovary Testis
ENSMUST00000172270 0.118±0.00 0.398±0.34 0.151±0.00 0.347±0.06 0.211±0.00 0.107±0.00 0.152±0.12 0.443±0.13 0.340±0.19

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003735 IEA structural constituent of ribosome
GO:0005575 ND cellular_component
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294189 RPL29-001 protein_coding Homo_sapiens 0 329
ENST00000413677 RP4-595K12.1-001 processed_pseudogene Homo_sapiens 0 292
ENST00000440227 RPL29P7-001 processed_pseudogene Homo_sapiens 0 274
ENST00000442089 RP5-1057J7.1-001 processed_pseudogene Homo_sapiens 0 265
ENST00000443998 RP11-632C17__A.1-001 processed_pseudogene Homo_sapiens 0 329
ENST00000446953 RP1-130G2.1-001 processed_pseudogene Homo_sapiens 0 255
ENST00000451924 RP11-42D20.1-001 processed_pseudogene Homo_sapiens 0 307
ENST00000463466 RP11-874G11.1-001 processed_pseudogene Homo_sapiens 0 204
ENST00000465069 RPL29P25-001 processed_pseudogene Homo_sapiens 0 193
ENST00000465434 RPL29P24-001 processed_pseudogene Homo_sapiens 0 259
ENST00000466397 RPL29-005 protein_coding Homo_sapiens 0 329
ENST00000475248 RPL29-008 protein_coding Homo_sapiens 0 329
ENST00000478358 RP11-490G8.1-001 processed_pseudogene Homo_sapiens 0 340
ENST00000479017 RPL29-009 protein_coding Homo_sapiens 0 329
ENST00000480306 RPL29-004 nonsense_mediated_decay Homo_sapiens 1.4013e-45 187
ENST00000481629 RPL29-003 protein_coding Homo_sapiens 2e-34 150
ENST00000482584 RP11-342F17.1-001 processed_pseudogene Homo_sapiens 0 270
ENST00000486188 RPL29P23-001 processed_pseudogene Homo_sapiens 0 220
ENST00000486565 RPL29-002 retained_intron Homo_sapiens 0.000000005 66
ENST00000486611 RPL29P3-001 processed_pseudogene Homo_sapiens 0 248
ENST00000492277 RPL29-007 protein_coding Homo_sapiens 0 329
ENST00000494408 RPL29P11-001 processed_pseudogene Homo_sapiens 0 318
ENST00000495383 RPL29-006 protein_coding Homo_sapiens 0 329
ENST00000496042 RP11-452G18.1-001 processed_pseudogene Homo_sapiens 0 191

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