C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L5 pseudogene 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396820 RPL5P8-001 ENSG00000213917 9606 - 2:214280638-214281452 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396820
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396820 1.150±0.00 2.350±0.00 0.598±0.00 1.609±0.00 2.936±0.00 0.589±0.00 1.895±0.00 1.302±0.00 0.892±0.00 0.496±0.00 0.425±0.00 0.049±0.00 3.829±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PB CIL_0006PB_0001 CGP 2:212999691-214410501
CIL_0005MG CIL_0005MG_0001 CGP 2:213284379-214578959

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071523 Gm15500-001 transcribed_processed_pseudogene Mus_musculus 0 453
ENSMUST00000071641 Gm15500-002 processed_transcript Mus_musculus 0 453
ENSMUST00000082223 Rpl5-001 protein_coding Mus_musculus 0 453
ENSMUST00000119057 Rpl5-ps2-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000121367 Rpl5-ps1-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000153590 Rpl5-002 protein_coding Mus_musculus 0 368
ENSMUST00000123183 Rpl5-003 retained_intron Mus_musculus 0 368
ENSMUST00000140659 Rpl5-005 retained_intron Mus_musculus 0 355
ENSMUST00000118662 Gm15616-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000118025 Gm15766-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000151767 Rpl5-006 retained_intron Mus_musculus 0 198
ENSMUST00000169624 Gm19840-001 processed_pseudogene Mus_musculus 5.60519e-45 185
ENSMUST00000129944 Rpl5-004 retained_intron Mus_musculus 2e-18 97

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