C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404382 RP3-472M2.2-001 ENSG00000218757 9606 - 6:154845074-154845620 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryENST00000404382
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary
ENST00000404382 0.168±0.00 0.371±0.00 0.089±0.00 0.862±0.65 1.736±0.00 0.101±0.06 0.953±0.00 1.576±0.00 1.886±0.00 0.566±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055J CIL_00055J_0001 CGP 6:154733325-155257723
CIL_00055I CIL_00055I_0001 CGP 6:154832697-155314493

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 327
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 322
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 292
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 222
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 209
ENSMUST00000186678 RP24-430C1.1-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 1e-34 150
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 311

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