C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424481 HNRNPA1P28-001 ENSG00000230170 9606 + X:119220782-119221742 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyMuscleOvaryTestisENST00000424481
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Muscle Ovary Testis
ENST00000424481 0.027±0.00 0.057±0.00 0.015±0.00 0.014±0.00 0.013±0.00 0.058±0.00 0.013±0.00 0.017±0.00 0.026±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00071D CIL_00071D_0001 CGP X:119078635-119244466

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1184
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1184
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 1144
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 1098
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 1096
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 1077
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 959
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 896
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 896
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 878
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 852
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 784
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000120205 Gm13297-001 processed_pseudogene Mus_musculus 0 612
ENSMUST00000189260 RP23-389M9.4-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000183590 Gm5269-002 protein_coding Mus_musculus 3e-33 147

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