C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000431782 RP11-169K16.6-001 ENSG00000224321 9606 + 1:15792796-15793285 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryTestisENST00000431782
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000431782 0.070±0.00 0.260±0.00 0.040±0.00 0.308±0.00 0.105±0.04 0.115±0.00 0.221±0.02 0.073±0.00 0.066±0.00 0.120±0.09 0.197±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QM CIL_0007QM_0001 VISTA 1:15548708-16149793

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168697 Gm10275-001 transcribed_processed_pseudogene Mus_musculus 0 516
ENSMUST00000092620 Gm10275-002 processed_transcript Mus_musculus 0 516
ENSMUST00000126610 Rpl12-001 protein_coding Mus_musculus 0 516
ENSMUST00000119608 Gm11425-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000076703 Gm9396-001 protein_coding Mus_musculus 0 494
ENSMUST00000102811 Rpl12-002 processed_transcript Mus_musculus 0 494
ENSMUST00000121857 Gm15793-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000116168 Rpl12-ps1-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000122012 Gm6285-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000071515 Gm7117-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000079794 Gm15732-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000121298 Rpl12-ps2-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000172474 Gm20430-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000117322 Gm12038-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000154340 Rpl12-003 processed_transcript Mus_musculus 8e-36 154
ENSMUST00000134912 Rpl12-007 processed_transcript Mus_musculus 8e-36 154
ENSMUST00000121669 Gm11745-001 processed_pseudogene Mus_musculus 3e-25 119

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