C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L12, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116168 Rpl12-ps1-001 ENSMUSG00000080054 10090 - 1:36957930-36958427 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLiverLungMuscleOvaryPlacentaENSMUST00000116168
Transcript ID Adipose Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000116168 0.095±0.00 0.060±0.02 0.016±0.01 0.122±0.01 0.086±0.00 0.048±0.05 0.130±0.00 0.058±0.00 0.195±0.08 0.119±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UA CIL_0002UA_0002 CGP 1:36792194-37076996

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310055 RP11-344H11.4-001 unprocessed_pseudogene Homo_sapiens 0 497
ENST00000374520 RPL12P1-001 processed_pseudogene Homo_sapiens 0 549
ENST00000424565 RPL12P2-001 processed_pseudogene Homo_sapiens 0 503
ENST00000424633 RPL12L3-001 processed_pseudogene Homo_sapiens 0 555
ENST00000428087 RP11-248I9.2-001 processed_pseudogene Homo_sapiens 0 195
ENST00000431782 RP11-169K16.6-001 processed_pseudogene Homo_sapiens 0 472
ENST00000432393 AC093698.2-001 processed_pseudogene Homo_sapiens 0 516
ENST00000432629 RPL12P4-001 processed_pseudogene Homo_sapiens 0 586
ENST00000439896 RPL12P1-001 processed_pseudogene Homo_sapiens 0 544
ENST00000448702 RPL12P1-001 processed_pseudogene Homo_sapiens 0 549
ENST00000467671 KIFC1-003 processed_transcript Homo_sapiens 0 460
ENST00000471280 RPL12P38-001 transcribed_processed_pseudogene Homo_sapiens 0 531
ENST00000472214 CTB-46B19.1-001 processed_pseudogene Homo_sapiens 0 425
ENST00000477007 RP11-106M3.1-001 processed_pseudogene Homo_sapiens 0 542
ENST00000481802 CTC-250I14.1-001 processed_pseudogene Homo_sapiens 0 510
ENST00000482081 RPL12P8-001 processed_pseudogene Homo_sapiens 0 518
ENST00000484010 RP11-428G5.2-001 processed_pseudogene Homo_sapiens 0 475
ENST00000485633 RPL12P33-001 processed_pseudogene Homo_sapiens 0 499
ENST00000486695 KIFC1-003 retained_intron Homo_sapiens 0 460
ENST00000486874 RPL12P37-001 processed_pseudogene Homo_sapiens 0 459
ENST00000492999 KIFC1-003 processed_transcript Homo_sapiens 0 455
ENST00000588627 RPL12P38-002 processed_transcript Homo_sapiens 0 531
ENST00000603116 RP4-741O10.1-001 processed_pseudogene Homo_sapiens 1e-33 145

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